Resources
DAMPC
DatabaseMetaproDB
MetaproDB is a framework for biome-informed metaproteomic database construction. It combines an R package for planning database builds with a Snakemake workflow for downloading, rehydrating, extracting, and assembling protein sequence databases.
gNOMO2
gNOMO2 is a comprehensive and modular multi-omics analysis software developed for microbiome research. It can analyze different combinations of omics data types such as 16S rRNA gene amplicon sequencing, metagenomics, metatranscriptomics and metaproteomics in an integrated way.
MetaPepticon
MetaPepticon is an end-to-end automated bioinformatics analysis tool for discovering anticancer peptide candidates in raw genomic, metagenomic, transcriptomic or metatranscriptomic data.
FoodProt
FoodProt is a curated collection of protein sequence databases tailored specifically for food metaproteomics. It spans 14 distinct food categories and offers ready-to-use protein sequence databases.