MetaproDB
MetaproDB is a framework for biome-informed metaproteomic database construction. It combines an R package for planning database builds with a Snakemake workflow for downloading, rehydrating, extracting, and assembling protein sequence databases.
Visit RepositoryAbout MetaproDB
MetaproDB is designed to support reproducible and transparent construction of metaproteomic search databases using ecological information. Instead of relying only on very large generic databases or matched metagenomes, MetaproDB enables users to build context-aware protein databases from curated biome resources or user-provided microbiome data.