Publications

Publications

DDT exposure drives time-dependent restructuring of soil microbiomes in urban garden microcosms
Research Paper

DDT exposure drives time-dependent restructuring of soil microbiomes in urban garden microcosms

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Metagenome-assembled genomes from urban pigeon feces in Istanbul, Türkiye
Announcement

Metagenome-assembled genomes from urban pigeon feces in Istanbul, Türkiye

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Microbial omics
Book Chapter

Microbial omics

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Biotechnological applications of Archaea
Book Chapter

Biotechnological applications of Archaea

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MetaPepticon: automated prediction of anticancer peptides from microbial genomes and metagenomes
Research Paper

MetaPepticon: automated prediction of anticancer peptides from microbial genomes and metagenomes

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From dysbiosis to therapy: shared gut microbial signatures and targeted interventions across liver, heart and brain disorders
Review

From dysbiosis to therapy: shared gut microbial signatures and targeted interventions across liver, heart and brain disorders

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Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology
Research Paper

Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology

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Gut microbiota alterations across REM sleep behavior disorder and Parkinson's disease: a machine learning-based meta-analysis
Preprint

Gut microbiota alterations across REM sleep behavior disorder and Parkinson's disease: a machine learning-based meta-analysis

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Construction of protein sequence databases for metaproteomics: A review of the current tools and databases.
Review

Construction of protein sequence databases for metaproteomics: A review of the current tools and databases.

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gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes.
Research Paper

gNOMO2: a comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes.

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Investigation of the relationship between Akkermansia genomic diversity in gut microbiota and Parkinson's disease dementia
Research Paper

Investigation of the relationship between Akkermansia genomic diversity in gut microbiota and Parkinson's disease dementia

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Metaproteogenomic analysis of saliva samples from Parkinson's disease patients with cognitive impairment.
Research Paper

Metaproteogenomic analysis of saliva samples from Parkinson's disease patients with cognitive impairment.

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