Publications

Publications

MetaproDB: a flexible and reproducible framework for biome-informed protein sequence database construction for metaproteomics
Research Paper

MetaproDB: a flexible and reproducible framework for biome-informed protein sequence database construction for metaproteomics

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Integrating multi-omics technologies to decipher microbiome functions
Research Paper

Integrating multi-omics technologies to decipher microbiome functions

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Dual activity microbial peptides catalog
Research Paper

Dual activity microbial peptides catalog

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DDT exposure drives time-dependent restructuring of soil microbiomes in urban garden microcosms
Research Paper

DDT exposure drives time-dependent restructuring of soil microbiomes in urban garden microcosms

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Metagenome-assembled genomes from urban pigeon feces in Istanbul, Türkiye
Announcement

Metagenome-assembled genomes from urban pigeon feces in Istanbul, Türkiye

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Microbial omics
Book Chapter

Microbial omics

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Biotechnological applications of Archaea
Book Chapter

Biotechnological applications of Archaea

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MetaPepticon: automated prediction of anticancer peptides from microbial genomes and metagenomes
Research Paper

MetaPepticon: automated prediction of anticancer peptides from microbial genomes and metagenomes

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From dysbiosis to therapy: shared gut microbial signatures and targeted interventions across liver, heart and brain disorders
Review

From dysbiosis to therapy: shared gut microbial signatures and targeted interventions across liver, heart and brain disorders

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Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology
Research Paper

Microbiome signatures of virulence in the oral-gut-brain axis influence Parkinson's disease and cognitive decline pathophysiology

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Gut microbiota alterations across REM sleep behavior disorder and Parkinson's disease: a machine learning-based meta-analysis
Preprint

Gut microbiota alterations across REM sleep behavior disorder and Parkinson's disease: a machine learning-based meta-analysis

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Construction of protein sequence databases for metaproteomics: A review of the current tools and databases.
Review

Construction of protein sequence databases for metaproteomics: A review of the current tools and databases.

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